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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.5

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2018-04-05, 16:53 based on data in: /mnt/gpfs/seb/ThamesData_Processing/Data/quality_check


        General Statistics

        Showing 342/342 rows and 4/5 columns.
        Sample Name% Dups% GCLengthM Seqs
        p5_A01_R1
        0.2%
        60%
        123 bp
        19.6
        p5_A01_R2
        0.2%
        60%
        123 bp
        19.6
        p5_A02_R1
        0.3%
        58%
        123 bp
        24.0
        p5_A02_R2
        0.3%
        58%
        123 bp
        24.0
        p5_A03_R1
        0.3%
        59%
        123 bp
        25.6
        p5_A03_R2
        0.3%
        59%
        123 bp
        25.6
        p5_A04_R1
        0.2%
        56%
        122 bp
        27.2
        p5_A04_R2
        0.2%
        56%
        123 bp
        27.2
        p5_A05_R1
        0.2%
        57%
        124 bp
        19.9
        p5_A05_R2
        0.2%
        57%
        124 bp
        19.9
        p5_A06_R1
        0.2%
        60%
        124 bp
        18.2
        p5_A06_R2
        0.2%
        60%
        123 bp
        18.2
        p5_A07_R1
        0.5%
        58%
        123 bp
        23.4
        p5_A07_R2
        0.5%
        58%
        123 bp
        23.4
        p5_A08_R1
        0.4%
        60%
        123 bp
        21.5
        p5_A08_R2
        0.4%
        60%
        123 bp
        21.5
        p5_A09_R1
        0.3%
        60%
        124 bp
        20.7
        p5_A09_R2
        0.3%
        60%
        124 bp
        20.7
        p5_A10_R1
        0.3%
        56%
        123 bp
        41.9
        p5_A10_R2
        0.2%
        56%
        123 bp
        41.9
        p5_A11_R1
        0.2%
        62%
        123 bp
        23.0
        p5_A11_R2
        0.2%
        62%
        123 bp
        23.0
        p5_A12_R1
        0.3%
        57%
        123 bp
        20.6
        p5_A12_R2
        0.2%
        57%
        123 bp
        20.6
        p5_B01_R1
        0.3%
        58%
        123 bp
        16.8
        p5_B01_R2
        0.3%
        58%
        123 bp
        16.8
        p5_B02_R1
        0.2%
        60%
        123 bp
        16.4
        p5_B02_R2
        0.2%
        60%
        123 bp
        16.4
        p5_B03_R1
        0.2%
        59%
        123 bp
        22.3
        p5_B03_R2
        0.2%
        59%
        118 bp
        22.3
        p5_B04_R1
        0.3%
        60%
        123 bp
        45.3
        p5_B04_R2
        0.3%
        60%
        123 bp
        45.3
        p5_B05_R1
        0.2%
        55%
        123 bp
        19.0
        p5_B05_R2
        0.2%
        55%
        123 bp
        19.0
        p5_B06_R1
        0.2%
        60%
        123 bp
        18.8
        p5_B06_R2
        0.2%
        60%
        123 bp
        18.8
        p5_B07_R1
        0.4%
        60%
        124 bp
        17.2
        p5_B07_R2
        0.3%
        60%
        124 bp
        17.2
        p5_B08_R1
        0.4%
        57%
        123 bp
        20.6
        p5_B08_R2
        0.4%
        57%
        123 bp
        20.6
        p5_B09_R1
        0.2%
        62%
        123 bp
        19.9
        p5_B09_R2
        0.2%
        62%
        123 bp
        19.9
        p5_B10_R1
        0.3%
        59%
        124 bp
        23.5
        p5_B10_R2
        0.2%
        59%
        124 bp
        23.5
        p5_B11_R1
        0.3%
        60%
        123 bp
        16.7
        p5_B11_R2
        0.2%
        60%
        123 bp
        16.7
        p5_B12_R1
        0.2%
        57%
        122 bp
        28.1
        p5_B12_R2
        0.2%
        57%
        123 bp
        28.1
        p5_C01_R1
        0.5%
        56%
        123 bp
        21.8
        p5_C01_R2
        0.5%
        56%
        123 bp
        21.8
        p5_C02_R1
        0.3%
        60%
        123 bp
        22.9
        p5_C02_R2
        0.3%
        60%
        123 bp
        22.9
        p5_C03_R1
        0.2%
        57%
        123 bp
        17.0
        p5_C03_R2
        0.2%
        57%
        123 bp
        17.0
        p5_C04_R1
        0.1%
        58%
        123 bp
        18.7
        p5_C04_R2
        0.1%
        58%
        123 bp
        18.7
        p5_C05_R1
        0.2%
        60%
        124 bp
        18.4
        p5_C05_R2
        0.2%
        60%
        124 bp
        18.4
        p5_C06_R1
        0.9%
        56%
        123 bp
        20.4
        p5_C06_R2
        0.8%
        56%
        124 bp
        20.4
        p5_C07_R1
        0.2%
        60%
        123 bp
        17.8
        p5_C07_R2
        0.2%
        60%
        123 bp
        17.8
        p5_C08_R1
        0.2%
        58%
        123 bp
        19.5
        p5_C08_R2
        0.2%
        58%
        123 bp
        19.5
        p5_C09_R1
        0.2%
        57%
        123 bp
        23.6
        p5_C09_R2
        0.2%
        57%
        123 bp
        23.6
        p5_C10_R1
        0.5%
        62%
        123 bp
        24.9
        p5_C10_R2
        0.3%
        62%
        124 bp
        24.9
        p5_C11_R1
        0.2%
        59%
        123 bp
        19.1
        p5_C11_R2
        0.2%
        59%
        123 bp
        19.1
        p5_C12_R1
        0.2%
        60%
        123 bp
        16.9
        p5_C12_R2
        0.2%
        60%
        123 bp
        16.9
        p5_D01_R1
        1.1%
        57%
        123 bp
        19.4
        p5_D01_R2
        1.1%
        57%
        123 bp
        19.4
        p5_D02_R1
        0.2%
        59%
        124 bp
        15.7
        p5_D02_R2
        0.2%
        59%
        124 bp
        15.7
        p5_D03_R1
        0.2%
        60%
        124 bp
        15.0
        p5_D03_R2
        0.2%
        60%
        124 bp
        15.0
        p5_D04_R1
        0.2%
        56%
        123 bp
        16.8
        p5_D04_R2
        0.2%
        56%
        123 bp
        16.8
        p5_D05_R1
        0.1%
        60%
        123 bp
        16.1
        p5_D05_R2
        0.1%
        60%
        123 bp
        16.1
        p5_D06_R1
        0.3%
        59%
        123 bp
        16.7
        p5_D06_R2
        0.3%
        59%
        124 bp
        16.7
        p5_D07_R1
        0.5%
        59%
        123 bp
        15.8
        p5_D07_R2
        0.4%
        59%
        123 bp
        15.8
        p5_D08_R1
        0.2%
        59%
        123 bp
        21.0
        p5_D08_R2
        0.2%
        59%
        123 bp
        21.0
        p5_D09_R1
        0.2%
        59%
        124 bp
        20.4
        p5_D09_R2
        0.2%
        59%
        124 bp
        20.4
        p5_D10_R1
        0.2%
        59%
        124 bp
        24.9
        p5_D10_R2
        0.2%
        59%
        124 bp
        24.9
        p5_D11_R1
        0.2%
        59%
        123 bp
        21.3
        p5_D11_R2
        0.2%
        59%
        123 bp
        21.3
        p5_D12_R1
        0.2%
        61%
        123 bp
        19.4
        p5_D12_R2
        0.2%
        61%
        123 bp
        19.4
        p5_E01_R1
        0.4%
        58%
        123 bp
        25.9
        p5_E01_R2
        0.3%
        58%
        123 bp
        25.9
        p5_E02_R1
        0.2%
        59%
        123 bp
        18.5
        p5_E02_R2
        0.2%
        59%
        123 bp
        18.5
        p5_E03_R1
        0.3%
        56%
        123 bp
        15.5
        p5_E03_R2
        0.3%
        56%
        123 bp
        15.5
        p5_E04_R1
        0.2%
        62%
        123 bp
        27.6
        p5_E04_R2
        0.1%
        62%
        123 bp
        27.6
        p5_E05_R1
        0.2%
        60%
        123 bp
        23.2
        p5_E05_R2
        0.2%
        60%
        118 bp
        23.2
        p5_E06_R1
        0.4%
        57%
        123 bp
        16.9
        p5_E06_R2
        0.4%
        57%
        123 bp
        16.9
        p5_E07_R1
        0.5%
        56%
        123 bp
        21.5
        p5_E07_R2
        0.5%
        56%
        124 bp
        21.5
        p5_E08_R1
        0.3%
        59%
        123 bp
        19.7
        p5_E08_R2
        0.3%
        59%
        123 bp
        19.7
        p5_E09_R1
        0.4%
        56%
        123 bp
        21.2
        p5_E09_R2
        0.4%
        56%
        123 bp
        21.2
        p5_E10_R1
        0.2%
        61%
        124 bp
        22.6
        p5_E10_R2
        0.2%
        62%
        124 bp
        22.6
        p5_E11_R1
        0.1%
        60%
        123 bp
        16.4
        p5_E11_R2
        0.1%
        60%
        123 bp
        16.4
        p5_E12_R1
        0.2%
        59%
        123 bp
        21.6
        p5_E12_R2
        0.2%
        59%
        123 bp
        21.6
        p5_F01_R1
        0.3%
        58%
        123 bp
        18.3
        p5_F01_R2
        0.3%
        59%
        123 bp
        18.3
        p5_F02_R1
        0.2%
        58%
        123 bp
        23.3
        p5_F02_R2
        0.2%
        58%
        123 bp
        23.3
        p5_F03_R1
        0.3%
        55%
        122 bp
        25.8
        p5_F03_R2
        0.3%
        55%
        122 bp
        25.8
        p5_F04_R1
        0.2%
        58%
        123 bp
        16.6
        p5_F04_R2
        0.2%
        58%
        123 bp
        16.6
        p5_F05_R1
        0.2%
        59%
        123 bp
        15.3
        p5_F05_R2
        0.2%
        59%
        123 bp
        15.3
        p5_F06_R1
        0.3%
        61%
        123 bp
        19.5
        p5_F06_R2
        0.3%
        61%
        123 bp
        19.5
        p5_F07_R1
        0.2%
        61%
        123 bp
        16.8
        p5_F07_R2
        0.2%
        61%
        123 bp
        16.8
        p5_F08_R1
        0.2%
        61%
        123 bp
        17.7
        p5_F08_R2
        0.2%
        61%
        123 bp
        17.7
        p5_F09_R1
        0.2%
        56%
        123 bp
        17.0
        p5_F09_R2
        0.2%
        56%
        123 bp
        17.0
        p5_F10_R1
        0.2%
        60%
        124 bp
        18.3
        p5_F10_R2
        0.2%
        60%
        124 bp
        18.3
        p5_F11_R1
        0.2%
        54%
        122 bp
        32.2
        p5_F11_R2
        0.2%
        54%
        123 bp
        32.2
        p5_F12_R1
        0.5%
        62%
        120 bp
        28.6
        p5_F12_R2
        0.3%
        62%
        121 bp
        28.6
        p5_G01_R1
        1.5%
        56%
        123 bp
        21.9
        p5_G01_R2
        1.5%
        56%
        123 bp
        21.9
        p5_G02_R1
        0.3%
        59%
        123 bp
        20.3
        p5_G02_R2
        0.3%
        59%
        123 bp
        20.3
        p5_G03_R1
        0.3%
        60%
        123 bp
        25.9
        p5_G03_R2
        0.3%
        60%
        117 bp
        25.9
        p5_G04_R1
        0.2%
        57%
        123 bp
        23.8
        p5_G04_R2
        0.2%
        57%
        118 bp
        23.8
        p5_G05_R1
        0.2%
        63%
        124 bp
        22.5
        p5_G05_R2
        0.1%
        63%
        118 bp
        22.5
        p5_G06_R1
        0.7%
        56%
        123 bp
        18.6
        p5_G06_R2
        0.7%
        56%
        123 bp
        18.6
        p5_G07_R1
        0.4%
        58%
        123 bp
        18.9
        p5_G07_R2
        0.4%
        59%
        123 bp
        18.9
        p5_G08_R1
        0.3%
        61%
        123 bp
        19.8
        p5_G08_R2
        0.2%
        61%
        123 bp
        19.8
        p5_G09_R1
        0.2%
        59%
        124 bp
        23.5
        p5_G09_R2
        0.2%
        59%
        124 bp
        23.5
        p5_G10_R1
        0.2%
        61%
        123 bp
        22.4
        p5_G10_R2
        0.2%
        61%
        123 bp
        22.4
        p5_G11_R1
        0.2%
        58%
        123 bp
        21.0
        p5_G11_R2
        0.2%
        58%
        123 bp
        21.0
        p5_G12_R1
        0.2%
        60%
        123 bp
        16.2
        p5_G12_R2
        0.2%
        60%
        123 bp
        16.2
        p5_H01_R1
        0.4%
        57%
        123 bp
        20.4
        p5_H01_R2
        0.3%
        58%
        123 bp
        20.4
        p5_H02_R1
        0.4%
        57%
        123 bp
        16.0
        p5_H02_R2
        0.4%
        57%
        123 bp
        16.0
        p5_H03_R1
        0.2%
        59%
        123 bp
        28.9
        p5_H03_R2
        0.2%
        59%
        114 bp
        28.9
        p5_H04_R1
        0.2%
        60%
        123 bp
        26.4
        p5_H04_R2
        0.2%
        60%
        116 bp
        26.4
        p5_H05_R1
        0.2%
        59%
        123 bp
        16.4
        p5_H05_R2
        0.2%
        59%
        123 bp
        16.4
        p5_H06_R1
        0.5%
        58%
        123 bp
        28.7
        p5_H06_R2
        0.5%
        59%
        123 bp
        28.7
        p5_H07_R1
        0.6%
        58%
        123 bp
        22.2
        p5_H07_R2
        0.4%
        58%
        123 bp
        22.2
        p5_H08_R1
        0.4%
        58%
        123 bp
        20.2
        p5_H08_R2
        0.3%
        58%
        123 bp
        20.2
        p5_H09_R1
        0.5%
        55%
        123 bp
        22.6
        p5_H09_R2
        0.4%
        55%
        123 bp
        22.6
        p5_H10_R1
        0.2%
        59%
        123 bp
        21.2
        p5_H10_R2
        0.2%
        60%
        123 bp
        21.2
        p5_H11_R1
        0.2%
        59%
        123 bp
        18.4
        p5_H11_R2
        0.2%
        59%
        123 bp
        18.4
        p5_H12_R1
        0.4%
        57%
        123 bp
        24.9
        p5_H12_R2
        0.3%
        57%
        123 bp
        24.9
        p6_A01_R1
        0.3%
        59%
        123 bp
        26.2
        p6_A01_R2
        0.3%
        59%
        123 bp
        26.2
        p6_A02_R1
        0.3%
        60%
        123 bp
        28.0
        p6_A02_R2
        0.2%
        60%
        123 bp
        28.0
        p6_A03_R1
        0.3%
        56%
        123 bp
        21.0
        p6_A03_R2
        0.3%
        56%
        123 bp
        21.0
        p6_A04_R1
        0.1%
        61%
        123 bp
        19.7
        p6_A04_R2
        0.1%
        61%
        123 bp
        19.7
        p6_A05_R1
        0.2%
        60%
        123 bp
        23.5
        p6_A05_R2
        0.2%
        60%
        123 bp
        23.5
        p6_A06_R1
        0.2%
        58%
        123 bp
        24.8
        p6_A06_R2
        0.2%
        58%
        123 bp
        24.8
        p6_A07_R1
        0.4%
        58%
        123 bp
        21.8
        p6_A07_R2
        0.3%
        58%
        123 bp
        21.8
        p6_A08_R1
        0.3%
        61%
        123 bp
        30.4
        p6_A08_R2
        0.3%
        61%
        123 bp
        30.4
        p6_A09_R1
        0.2%
        58%
        123 bp
        24.4
        p6_A09_R2
        0.2%
        58%
        123 bp
        24.4
        p6_A10_R1
        0.4%
        58%
        124 bp
        22.2
        p6_A10_R2
        0.4%
        58%
        123 bp
        22.2
        p6_B01_R1
        0.6%
        57%
        123 bp
        25.0
        p6_B01_R2
        0.6%
        57%
        123 bp
        25.0
        p6_B02_R1
        0.2%
        60%
        123 bp
        26.9
        p6_B02_R2
        0.1%
        60%
        123 bp
        26.9
        p6_B03_R1
        0.2%
        59%
        123 bp
        19.7
        p6_B03_R2
        0.2%
        59%
        123 bp
        19.7
        p6_B04_R1
        0.1%
        61%
        124 bp
        27.5
        p6_B04_R2
        0.1%
        61%
        109 bp
        27.5
        p6_B05_R1
        0.2%
        61%
        123 bp
        16.1
        p6_B05_R2
        0.1%
        61%
        123 bp
        16.1
        p6_B06_R1
        0.2%
        60%
        123 bp
        22.4
        p6_B06_R2
        0.1%
        60%
        123 bp
        22.4
        p6_B07_R1
        0.7%
        50%
        123 bp
        25.5
        p6_B07_R2
        0.7%
        50%
        123 bp
        25.5
        p6_B08_R1
        0.4%
        58%
        123 bp
        25.1
        p6_B08_R2
        0.3%
        58%
        123 bp
        25.1
        p6_B09_R1
        0.2%
        58%
        123 bp
        19.5
        p6_B09_R2
        0.2%
        58%
        123 bp
        19.5
        p6_B10_R1
        0.2%
        58%
        124 bp
        21.2
        p6_B10_R2
        0.2%
        58%
        123 bp
        21.2
        p6_C01_R1
        0.3%
        56%
        123 bp
        30.6
        p6_C01_R2
        0.3%
        56%
        123 bp
        30.6
        p6_C02_R1
        0.5%
        54%
        123 bp
        25.7
        p6_C02_R2
        0.4%
        54%
        123 bp
        25.7
        p6_C03_R1
        0.3%
        57%
        123 bp
        26.5
        p6_C03_R2
        0.3%
        57%
        123 bp
        26.5
        p6_C04_R1
        0.2%
        62%
        123 bp
        26.0
        p6_C04_R2
        0.2%
        62%
        123 bp
        26.0
        p6_C05_R1
        0.1%
        63%
        123 bp
        26.5
        p6_C05_R2
        0.1%
        63%
        123 bp
        26.5
        p6_C06_R1
        0.3%
        57%
        123 bp
        24.7
        p6_C06_R2
        0.3%
        57%
        123 bp
        24.7
        p6_C07_R1
        0.2%
        58%
        123 bp
        24.2
        p6_C07_R2
        0.2%
        59%
        123 bp
        24.2
        p6_C08_R1
        0.2%
        59%
        123 bp
        21.3
        p6_C08_R2
        0.1%
        59%
        123 bp
        21.3
        p6_C09_R1
        0.2%
        59%
        123 bp
        22.5
        p6_C09_R2
        0.2%
        59%
        123 bp
        22.5
        p6_C10_R1
        0.2%
        59%
        123 bp
        17.5
        p6_C10_R2
        0.2%
        59%
        123 bp
        17.5
        p6_D01_R1
        0.3%
        59%
        123 bp
        26.6
        p6_D01_R2
        0.2%
        59%
        123 bp
        26.6
        p6_D02_R1
        0.2%
        56%
        123 bp
        24.3
        p6_D02_R2
        0.1%
        56%
        123 bp
        24.3
        p6_D03_R1
        0.2%
        57%
        123 bp
        21.3
        p6_D03_R2
        0.2%
        57%
        123 bp
        21.3
        p6_D04_R1
        0.2%
        63%
        124 bp
        57.4
        p6_D04_R2
        0.1%
        63%
        109 bp
        57.4
        p6_D05_R1
        0.2%
        59%
        123 bp
        26.4
        p6_D05_R2
        0.1%
        59%
        123 bp
        26.4
        p6_D06_R1
        0.2%
        57%
        123 bp
        26.5
        p6_D06_R2
        0.2%
        57%
        123 bp
        26.5
        p6_D07_R1
        0.3%
        58%
        123 bp
        23.5
        p6_D07_R2
        0.3%
        58%
        123 bp
        23.5
        p6_D08_R1
        0.2%
        59%
        123 bp
        20.7
        p6_D08_R2
        0.2%
        59%
        123 bp
        20.7
        p6_D09_R1
        0.5%
        56%
        124 bp
        21.5
        p6_D09_R2
        0.4%
        56%
        124 bp
        21.5
        p6_E01_R1
        0.3%
        56%
        123 bp
        21.1
        p6_E01_R2
        0.3%
        56%
        123 bp
        21.1
        p6_E02_R1
        0.2%
        61%
        123 bp
        29.0
        p6_E02_R2
        0.2%
        61%
        123 bp
        29.0
        p6_E03_R1
        0.1%
        55%
        123 bp
        20.4
        p6_E03_R2
        0.1%
        55%
        123 bp
        20.4
        p6_E04_R1
        0.2%
        60%
        124 bp
        37.3
        p6_E04_R2
        0.1%
        60%
        110 bp
        37.3
        p6_E05_R1
        0.2%
        62%
        123 bp
        23.1
        p6_E05_R2
        0.2%
        62%
        123 bp
        23.1
        p6_E06_R1
        0.2%
        60%
        123 bp
        23.9
        p6_E06_R2
        0.2%
        60%
        123 bp
        23.9
        p6_E07_R1
        0.3%
        55%
        123 bp
        22.6
        p6_E07_R2
        0.2%
        55%
        123 bp
        22.6
        p6_E08_R1
        0.3%
        56%
        123 bp
        22.0
        p6_E08_R2
        0.3%
        56%
        123 bp
        22.0
        p6_E09_R1
        0.2%
        60%
        124 bp
        22.9
        p6_E09_R2
        0.2%
        60%
        123 bp
        22.9
        p6_F01_R1
        0.2%
        58%
        123 bp
        26.0
        p6_F01_R2
        0.2%
        58%
        123 bp
        26.0
        p6_F02_R1
        0.4%
        56%
        123 bp
        37.6
        p6_F02_R2
        0.3%
        56%
        123 bp
        37.6
        p6_F03_R1
        0.1%
        60%
        123 bp
        21.1
        p6_F03_R2
        0.1%
        60%
        123 bp
        21.1
        p6_F04_R1
        0.2%
        60%
        123 bp
        19.7
        p6_F04_R2
        0.1%
        60%
        123 bp
        19.7
        p6_F05_R1
        0.2%
        64%
        123 bp
        22.1
        p6_F05_R2
        0.1%
        64%
        123 bp
        22.1
        p6_F06_R1
        0.2%
        55%
        123 bp
        21.8
        p6_F06_R2
        0.1%
        55%
        123 bp
        21.8
        p6_F07_R1
        0.3%
        59%
        123 bp
        27.4
        p6_F07_R2
        0.3%
        59%
        123 bp
        27.4
        p6_F08_R1
        0.2%
        57%
        123 bp
        21.6
        p6_F08_R2
        0.2%
        57%
        123 bp
        21.6
        p6_F09_R1
        0.3%
        59%
        123 bp
        22.1
        p6_F09_R2
        0.2%
        59%
        123 bp
        22.1
        p6_G01_R1
        0.3%
        59%
        123 bp
        24.7
        p6_G01_R2
        0.2%
        59%
        123 bp
        24.7
        p6_G02_R1
        0.4%
        57%
        123 bp
        26.0
        p6_G02_R2
        0.3%
        57%
        123 bp
        26.0
        p6_G03_R1
        0.1%
        63%
        123 bp
        24.1
        p6_G03_R2
        0.1%
        63%
        123 bp
        24.1
        p6_G04_R1
        0.3%
        59%
        124 bp
        40.8
        p6_G04_R2
        0.2%
        59%
        109 bp
        40.8
        p6_G05_R1
        0.2%
        58%
        123 bp
        21.4
        p6_G05_R2
        0.2%
        58%
        123 bp
        21.4
        p6_G06_R1
        0.2%
        57%
        123 bp
        21.6
        p6_G06_R2
        0.2%
        57%
        123 bp
        21.6
        p6_G07_R1
        0.4%
        58%
        123 bp
        24.4
        p6_G07_R2
        0.3%
        58%
        123 bp
        24.4
        p6_G08_R1
        0.1%
        59%
        123 bp
        20.2
        p6_G08_R2
        0.1%
        59%
        123 bp
        20.2
        p6_G09_R1
        0.3%
        56%
        124 bp
        19.6
        p6_G09_R2
        0.3%
        56%
        123 bp
        19.6
        p6_H01_R1
        0.2%
        55%
        123 bp
        24.0
        p6_H01_R2
        0.2%
        55%
        123 bp
        24.0
        p6_H02_R1
        0.5%
        57%
        123 bp
        28.9
        p6_H02_R2
        0.5%
        57%
        123 bp
        28.9
        p6_H03_R1
        0.1%
        60%
        124 bp
        16.7
        p6_H03_R2
        0.1%
        60%
        124 bp
        16.7
        p6_H04_R1
        0.2%
        62%
        124 bp
        20.2
        p6_H04_R2
        0.2%
        62%
        124 bp
        20.2
        p6_H05_R1
        0.2%
        56%
        123 bp
        22.3
        p6_H05_R2
        0.2%
        56%
        123 bp
        22.3
        p6_H06_R1
        0.3%
        60%
        123 bp
        20.9
        p6_H06_R2
        0.2%
        60%
        123 bp
        20.9
        p6_H07_R1
        0.5%
        59%
        123 bp
        24.6
        p6_H07_R2
        0.4%
        59%
        123 bp
        24.6
        p6_H08_R1
        0.3%
        56%
        124 bp
        21.2
        p6_H08_R2
        0.3%
        56%
        123 bp
        21.2
        p6_H09_R1
        0.3%
        59%
        124 bp
        22.5
        p6_H09_R2
        0.3%
        59%
        123 bp
        22.5

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

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        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

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        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

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        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

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        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

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        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

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        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        342 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

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